Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs7979654 | chr12:29432138 | T/C | 3.96E-9 | 508 | 37.7 | 37.03 | 6.07 | KM Plot |
KIRC | rs80124066 | chr21:47912913 | A/G | 2.71E-5 | 505 | 37.2 | 43.25 | 6.87 | KM Plot |
KIRC | rs80125611 | chr4:104459509 | T/G | 8.48E-5 | 499 | 14.3 | 42.95 | 37.35 | KM Plot |
KIRC | rs80255662 | chr16:66527757 | T/C | 7.94E-8 | 502 | 37.67 | 31.52 | 1.68 | KM Plot |
KIRC | rs80272295 | chr7:12401021 | C/T | 5.16E-5 | 503 | 37.6 | 33.97 | 14.87 | KM Plot |
KIRC | rs80273102 | chr11:34773121 | G/C | 8.98E-8 | 506 | 37.67 | 33.35 | 3.3 | KM Plot |
KIRC | rs80295687 | chr11:34736111 | C/A | 6.78E-8 | 504 | 37.37 | 37.08 | 3.3 | KM Plot |
KIRC | rs80314096 | chr9:92166890 | T/C | 3.96E-5 | 503 | 37.33 | 47.17 | 10.62 | KM Plot |
KIRC | rs80347277 | chr4:107883351 | C/T | 1.28E-5 | 508 | 37.67 | 35.83 | 9.02 | KM Plot |
KIRC | rs8060740 | chr16:82823255 | T/C | 2.86E-7 | 502 | 37.47 | 29.9 | 3.37 | KM Plot |
KIRC | rs8094603 | chr18:33203731 | A/T | 3.23E-5 | 509 | 37.75 | 31.77 | 7.37 | KM Plot |
KIRC | rs8105657 | chr19:43813582 | C/T | 4.33E-12 | 507 | 37.53 | 36.4 | 2.17 | KM Plot |
KIRC | rs8106882 | chr19:43817094 | A/G | 5.8E-12 | 503 | 37.53 | 37.47 | 2.17 | KM Plot |
KIRC | rs8109809 | chr19:43770293 | A/T | 2.94E-12 | 502 | 37.67 | 36.48 | 2.17 | KM Plot |
KIRC | rs8110110 | chr19:43770294 | G/T | 2.94E-12 | 502 | 37.67 | 36.48 | 2.17 | KM Plot |